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Zhang Z*, Russell LE*, Packer AM*, Gauld OM, Häusser M (2018) Closed-loop all-optical interrogation of neural circuits in vivo
Nature Methods https://doi.org/10.1038/s41592-018-0183-z *Authors contributed equally.
Aitchison L, Russell LE, Packer AM, Yan J, Castonguay P, Häusser M, Turaga SC (2017) Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit
Advances in Neural Information Processing Systems 30:3488-3497.
Watson BO, Yuste R, Packer AM (2016) PackIO and EphysViewer: software tools for acquisition and analysis of neuroscience data.
bioRxiv 054080; doi: http://dx.doi.org/10.1101/054080
Packer AM, Russell LE, Dalgleish HWP, Häusser M (2015) Simultaneous all-optical targeted manipulation and recording of neural circuit activity with cellular resolution in vivo.
Nature Methods 12:140-146.
Packer AM, Roska B, Häusser M (2013) Targeting neurons and photons for optogenetics.
Nature Neuroscience 16:805-815.
Pachitariu M, Packer AM, Pettit N, Dalgleish H, Häusser M, Sahani M (2013) Extracting regions of interest from biological images with convolutional sparse block coding.
Advances in Neural Information Processing Systems 26:1745-1753.
Turaga S, Buesing L, Packer AM, Dalgleish H, Pettit N, Häusser M, Macke J (2013) Inferring neural population dynamics from multiple partial recordings of the same neural circuit.
Advances in Neural Information Processing Systems 26:539-547.
Packer AM, McConnell DJ, Fino E, Yuste R (2013) Axo-dendritic overlap and laminar projection can explain interneuron connectivity to pyramidal cells.
Cerebral Cortex 23(12):2790-2802. *Selected for cover
Fino EF*, Packer AM*, Yuste R (2013) The Logic of Inhibitory Connectivity in the Neocortex.
The Neuroscientist 19(3):228-237. *Authors contributed equally.
Packer AM*, Peterka DS*, Hirtz JJ, Prakash R, Deisseroth K, Yuste R (2012) Two-photon optogenetics of dendritic spines and neural circuits.
Nature Methods 9:1202-1205. *Authors contributed equally.
Prakash R, Yizhar O, Grewe B, Ramakrishnan C, Wang N, Goshen I, Packer AM, Peterka DS, Yuste R, Schnitzer MJ, Deisseroth, K (2012) Two-photon optogenetic toolbox for fast inhibition, excitation, and bistable modulation.
Nature Methods 9:1171-1179.
Packer AM, Yuste R (2011) Dense, unspecific connectivity of neocortical parvalbumin-positive interneurons: a canonical microcircuit for inhibition?
Journal of Neuroscience 31(37):13260-13271. *Selected for cover
Ahmadian Y, Packer AM, Yuste R, Paninski L. (2011) Designing optimal stimuli to control neuronal spike timing.
J. Neurophys. 106(2):1038-1053.
Snider SB, Yuste R, Packer AM. (2010) A neural circuit for angular velocity computation.
Frontiers in Neural Circuits 4:123.
McGarry LM, Packer AM, Fino E, Nikolenko V, Sippy T, Yuste R. (2010) Quantitative classification of somatostatin-positive neocortical interneurons identifies three interneuron subtypes.
Frontiers in Neural Circuits 4:12.
Vogelstein J, Packer AM, Machado T, Sippy T, Babadi B, Yuste R, Paninski L. (2010) Fast non-negative deconvolution for spike train inference from population calcium imaging.
J. Neurophys. 104(6):3691-704.
Vogelstein J, Watson B, Packer AM, Yuste R, Jedynak B, Paninski L. (2009) Spike inference from calcium imaging using sequential Monte Carlo methods.
Biophysical Journal 97:636-55.
Ascoli G, et al. (2008) Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex.
Nature Reviews Neuroscience 9:557-568.
Zhang Z*, Russell LE*, Packer AM*, Gauld OM, Häusser M (2018) Closed-loop all-optical interrogation of neural circuits in vivo
Nature Methods https://doi.org/10.1038/s41592-018-0183-z *Authors contributed equally.
Aitchison L, Russell LE, Packer AM, Yan J, Castonguay P, Häusser M, Turaga SC (2017) Model-based Bayesian inference of neural activity and connectivity from all-optical interrogation of a neural circuit
Advances in Neural Information Processing Systems 30:3488-3497.
Watson BO, Yuste R, Packer AM (2016) PackIO and EphysViewer: software tools for acquisition and analysis of neuroscience data.
bioRxiv 054080; doi: http://dx.doi.org/10.1101/054080
Packer AM, Russell LE, Dalgleish HWP, Häusser M (2015) Simultaneous all-optical targeted manipulation and recording of neural circuit activity with cellular resolution in vivo.
Nature Methods 12:140-146.
Packer AM, Roska B, Häusser M (2013) Targeting neurons and photons for optogenetics.
Nature Neuroscience 16:805-815.
Pachitariu M, Packer AM, Pettit N, Dalgleish H, Häusser M, Sahani M (2013) Extracting regions of interest from biological images with convolutional sparse block coding.
Advances in Neural Information Processing Systems 26:1745-1753.
Turaga S, Buesing L, Packer AM, Dalgleish H, Pettit N, Häusser M, Macke J (2013) Inferring neural population dynamics from multiple partial recordings of the same neural circuit.
Advances in Neural Information Processing Systems 26:539-547.
Packer AM, McConnell DJ, Fino E, Yuste R (2013) Axo-dendritic overlap and laminar projection can explain interneuron connectivity to pyramidal cells.
Cerebral Cortex 23(12):2790-2802. *Selected for cover
Fino EF*, Packer AM*, Yuste R (2013) The Logic of Inhibitory Connectivity in the Neocortex.
The Neuroscientist 19(3):228-237. *Authors contributed equally.
Packer AM*, Peterka DS*, Hirtz JJ, Prakash R, Deisseroth K, Yuste R (2012) Two-photon optogenetics of dendritic spines and neural circuits.
Nature Methods 9:1202-1205. *Authors contributed equally.
Prakash R, Yizhar O, Grewe B, Ramakrishnan C, Wang N, Goshen I, Packer AM, Peterka DS, Yuste R, Schnitzer MJ, Deisseroth, K (2012) Two-photon optogenetic toolbox for fast inhibition, excitation, and bistable modulation.
Nature Methods 9:1171-1179.
Packer AM, Yuste R (2011) Dense, unspecific connectivity of neocortical parvalbumin-positive interneurons: a canonical microcircuit for inhibition?
Journal of Neuroscience 31(37):13260-13271. *Selected for cover
Ahmadian Y, Packer AM, Yuste R, Paninski L. (2011) Designing optimal stimuli to control neuronal spike timing.
J. Neurophys. 106(2):1038-1053.
Snider SB, Yuste R, Packer AM. (2010) A neural circuit for angular velocity computation.
Frontiers in Neural Circuits 4:123.
McGarry LM, Packer AM, Fino E, Nikolenko V, Sippy T, Yuste R. (2010) Quantitative classification of somatostatin-positive neocortical interneurons identifies three interneuron subtypes.
Frontiers in Neural Circuits 4:12.
Vogelstein J, Packer AM, Machado T, Sippy T, Babadi B, Yuste R, Paninski L. (2010) Fast non-negative deconvolution for spike train inference from population calcium imaging.
J. Neurophys. 104(6):3691-704.
Vogelstein J, Watson B, Packer AM, Yuste R, Jedynak B, Paninski L. (2009) Spike inference from calcium imaging using sequential Monte Carlo methods.
Biophysical Journal 97:636-55.
Ascoli G, et al. (2008) Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex.
Nature Reviews Neuroscience 9:557-568.